Article Text
Abstract
Background Adenosine is a metabolite that suppresses antitumor immune response of T and NK cells via extracellular binding to the two subtypes of adenosine-2 receptors, A2ARs. While blockade of the A2AARs subtype effectively rescues lymphocyte activity, with four A2AAR antagonists currently in anticancer clinical trials, less is known for the therapeutic potential of the other A2BAR blockade within cancer immunotherapy. Recent studies suggest the formation of A2AAR/A2BAR dimers in tissues that coexpress the two receptor subtypes, where the A2BAR plays a dominant role, suggesting it as a promising target for cancer immunotherapy.
Methods We report the synthesis and functional evaluation of five potent A2BAR antagonists and a dual A2AAR/A2BAR antagonist. The compounds were designed using previous pharmacological data assisted by modeling studies. Synthesis was developed using multicomponent approaches. Flow cytometry was used to evaluate the phenotype of T and NK cells on A2BAR antagonist treatment. Functional activity of T and NK cells was tested in patient-derived tumor spheroid models.
Results We provide data for six novel small molecules: five A2BAR selective antagonists and a dual A2AAR/A2BAR antagonist. The growth of patient-derived breast cancer spheroids is prevented when treated with A2BAR antagonists. To elucidate if this depends on increased lymphocyte activity, immune cells proliferation, and cytokine production, lymphocyte infiltration was evaluated and compared with the potent A2AAR antagonist AZD-4635. We find that A2BAR antagonists rescue T and NK cell proliferation, IFNγ and perforin production, and increase tumor infiltrating lymphocytes infiltration into tumor spheroids without altering the expression of adhesion molecules.
Conclusions Our results demonstrate that A2BAR is a promising target in immunotherapy, identifying ISAM-R56A as the most potent candidate for A2BAR blockade. Inhibition of A2BAR signaling restores T cell function and proliferation. Furthermore, A2BAR and dual A2AAR/A2BAR antagonists showed similar or better results than A2AAR antagonist AZD-4635 reinforcing the idea of dominant role of the A2BAR in the regulation of the immune system.
- adenosine
- immunotherapy
- lymphocyte activation
- lymphocytes, tumor-infiltrating
Data availability statement
Data are available on reasonable request.
This is an open access article distributed in accordance with the Creative Commons Attribution 4.0 Unported (CC BY 4.0) license, which permits others to copy, redistribute, remix, transform and build upon this work for any purpose, provided the original work is properly cited, a link to the licence is given, and indication of whether changes were made. See https://creativecommons.org/licenses/by/4.0/.
Statistics from Altmetric.com
WHAT IS ALREADY KNOWN ON THIS TOPIC
A2BAR is a low affinity adenosine receptor that is activated by high adenosine concentration. With adenosine being an anti-inflammatory and immunosuppressive metabolite that accumulates at high concentrations in the tumor microenvironment, targeting A2BAR is a promising metabolic immune checkpoint.
WHAT THIS STUDY ADDS
We synthesized high affinity non-xanthine A2BAR antagonists with improved T and NK cell activities under exogenous and endogenous adenosine suppression. A2BAR inhibition furthermore improves infiltration of tumor-infiltrating lymphocytes into patient-derived 3D spheroids.
HOW THIS STUDY MIGHT AFFECT RESEARCH, PRACTICE AND/OR POLICY
These findings provide practical readouts to study adenosine-mediated suppression and identified putative A2BAR antagonists to alleviate suppression of T and NK cells.
Background
Accounting for its heterogeneity with more than 100 distinct types, cancer is a complex and dynamic disease.1 This complexity has been rationalized to 10 transforming hallmarks, of which avoiding immune destruction explains how the immune system plays an essential role during tumorigenesis.1 Therapies based on activating the immune system can result in beneficial responses in patients with metastatic cancer.2 Treatment with antibodies targeting the immunological checkpoint axis PD-1–PD-L1/2 can result in potent antitumor T cell activation and clinically meaningful long-lasting responses.2 Primary resistance to immune checkpoint therapy can be attributed to the absence of intratumoral T cells. This has fueled the search for strategies to convert immune-excluded tumors to immune-infiltrated tumors.2 Since the tumor microenvironment (TME) often imposes metabolic stress and dysregulation on tumor infiltrating lymphocytes (TILs), targeting immune metabolism represents a promising direction.3
Purinergic signaling involves extracellular purine nucleosides [Adenosine (ADO)] and nucleotides (ATP and AMP) as signaling molecules. ADO, an ubiquitous metabolite with critical anti-inflammatory and immunosuppressive roles, downregulates inflammatory cytokine secretion as well as decreases the effector function and proliferation of T and natural killer (NK) cells (online supplemental figure 1).4 Several tumors display transformed purine metabolism thereby facilitating the production of ADO and reducing its degradation.5 Oxygen deprivation reduces the availability of energy source and promotes the accumulation of extracellular ATP.6 Moreover, hypoxia is a strong inducer of the ectonucleotidases CD39 and CD73.4 The released ATP suffers the consecutive action of these ectonucleotidases resulting in increased ADO concentration from nanomolar (nM) in physiological conditions to micromolar (μΜ) range in the TME.7–10
Supplemental material
Extracellular ADO binds to purinergic type-1 G-protein coupled receptors (GPCRs), accordingly named adenosine receptors (AR)—A1AR, A2AAR, A2BAR and A3AR.4 11 A2AAR is highly expressed in most immune cells, with evidences supporting that its activation in the TME suppresses antitumor immune responses,12 13 enhancement of regulatory T cells immune suppressive activity14 and inhibition of antigen presentation by dendritic cells.15 These reports set the foundation for inhibiting A2AAR in hypoxic tumors to improve antitumor immune responses. Consequently, A2AAR antagonism has emerged as a prototypical approach of small molecule immunotherapeutic, with recent encouraging clinical outcomes in treatment-refractory cancer,16 17 along the four A2AAR antagonists already in clinical trials.18
While the A1AR, A2AAR and A3AR receptor subtypes bind ADO with high affinity, the A2BAR exhibits a low affinity profile. Thus, A2BAR will only be activated by high ADO concentrations which usually takes place under extreme environmental cues like inflammation, injury, hypoxia or cellular stress.19 20 Recent evidence suggests A2BAR roles in cancer,5 21 following early studies highlighting its activation as a promoter for tumor proliferation,5 6 angiogenesis,22 cell invasion and metastasis.5 Furthermore, the presence of A2BAR in mast cells, neutrophils, dendritic cells, macrophages and lymphocytes has shown important immunoregulatory roles within the immune suppressive TME.4 5 23 The expression and signaling of the two A2AR subtypes are highly affected by pathological conditions, with the A2BAR/A2AAR expression ratio rapidly increasing under hypoxic conditions.5 19 24 In this context, a recent study demonstrated extensive heteromeric complex formation in tissues where A2B and A2A ARs were coexpressed.19 A2AAR was previously shown to be involved in regulation of A2BAR cell surface expression.25 Moreover, a dramatically altered pharmacology of the A2AAR was observed when coexpressed with the A2BAR with selective A2AAR ligands loosing high affinity binding to A2AAR and showing reduced potency. These would have major implications for the clinical use of A2AAR ligands, as they would fail to modulate the receptor in an A2AAR-A2BAR heterodimer context. Instead, the A2AAR-A2BAR heterodimer and the A2BAR could be considered as novel promising pharmacological targets for cancer immunotherapy.
In this study, six non-xanthinic A2AR antagonists, five selective A2BAR and a dual A2AAR/A2BAR, were evaluated for their immunomodulatory effect. Non-xanthinic scaffold exhibits improved pharmacokinetic properties and bring structural novelty to adenosine antagonists reported to date.26 27 Using healthy donor in vitro and patient-derived ex vivo models, we demonstrated that antagonizing A2BAR signaling significantly alleviated adenosine-mediated suppression across different lymphocyte subsets. Notably, marked differences in the outcomes of A2BAR antagonist drug screening were observed when comparing exogenous and endogenously produced ADO. These results show a comparative immunological footprint among different A2BAR antagonists, a dual A2BAR/A2AAR antagonist and an A2AAR antagonist in clinical trials, strongly suggesting that the A2BAR is a promising target in cancer immunotherapy.
Materials and methods
Chemistry
The synthesis of the previously described antagonists, analytical procedure and spectroscopic and analytical data for all the compounds is detailed in online supplemental information. For the synthesis of ISAM–R56A, a mixture of isopropyl 4-(furan-2-yl)−2-methyl-1,4-dihydrobenzo4 5 imidazo[1,2 a]pyrimidine-3-carboxylate (ISAM–140) (1 mmol), 2-fluorobenzyl bromide (3 mmol) and potassium carbonate (4 mmol) in 4 mL of DMF was orbitally stirred in a coated Kimble vial at 80°C for 5 hours. After completion of the reaction, as indicated by TLC, the solvent was removed in vacuum and the obtained oily residue was purified by column chromatography on silica gel to obtain two regioisomers (ISAM–R56A and ISAM–R56B). For the synthesis of ISAM–M89A, a mixture of 2-amino-5-chlorobenzimidazole (7.5 mmol), 3-furanecarboxaldehyde (5 mmol), isopropyl acetoacetate (5 mmol) and ZnCl2 (0.5 mmol) in 2.5 mL of THF was orbitally stirred in a coated Kimble vial at 80°C for 12 hours. After completion of the reaction, as indicated by TLC, the solvent was removed and the obtained oily residue was purified by column chromatography on silica gel, to obtain two regioisomers (ISAM–M89A and ISAM–M89B).
Supplemental material
Binding affinity of adenosine receptor subtypes
The affinity and selectivity profiles of the ligands obtained was studied in vitro, radioligand binding assays, at the four human specific ARs subtypes, using experimental protocols previously described.28–30 All ligands were prepared and tested as racemic mixtures. Human ARs expressed in transfected CHO (A1AR), HeLa (A2AAR and A3AR) and HEK-293 (A2BAR) cells were employed. The following radioligands were used for binding experiments: [3H]DPCPX for A1AR and A2BAR, at 2 and 25 nM, respectively; [3H]ZM241385 at 3 nM for A2AAR; and [3H]NECA at 30 nM for A3AR. Non-specific binding was determined in the presence of R-PIA 10 µM for A1AR, NECA 50 µM for A2AAR, NECA 400 μΜ for A2BAR and R-PIA 100 μΜ for A3AR. The biological data are expressed as Ki (nM, n=3. Ki values were obtained by fitting the data with non-linear regression using Prism 5.0 software (GraphPad, San Diego, CA, USA). Results are the mean of three experiments, each performed in duplicate.
Blockade of hCD73 assays
The selected AR antagonists were tested at 1 µM and 10 µM. Experiments (human CD73) were carried out in a white 384-Optiplate (Perkin Elmer 6007290). Test compounds and the standard (α-β-methylene adenosine, Sigma M3763), 0.5 µg/mL enzyme (Cayman RYD-5795-EN-010), 300 µM AMP (Sigma A2252) and 100 µM ATP (A2383) were added in a final volume of 25 µL/well, using 25 mM Tris-HCl, 5 mM MgCl2·6H2O, pH=7.4 as assay buffer. The reaction mixture was incubated at 37°C for 15 min, after incubation 25 µL of Cell Titer-Glo Luminescent cell viability (Promega G7571) was added and shaken during 2 min before incubation at RT for 10 min. Luminescence at 100 ms was measured in the Perkin Elmer Enspire multimode plate reader.
cAMP assays
Assays were performed in transfected A2BAR using a cyclic AMP (cAMP) enzyme immunoassay kit (Amersham Biosciences) following previously described protocols.28 30 HEK-293 cells were seeded (10,000 cells/well) in 96-well culture plates and incubated at 37°C in an atmosphere with 5% CO2 in Eagle’s Medium Nutrient Mixture F-12 (EMEM F-12), containing 10% fetal calf serum (FCS) and 1% L-Glutamine. Cells were washed three times with 200 µL assay medium (EMEM-F12 and 25 mM HEPES pH=7.4) and pre-incubated with assay medium containing 30 µM rolipram and test compounds at 37°C for 15 min. Ten µM NECA was incubated for 15 min at 37°C (total incubation time 30 min). Reaction was stopped with lysis buffer supplied in the kit and the enzyme immunoassay was carried out for detection of intracellular cAMP at 450 nm in an Ultra Evolution detector (Tecan). The dose-response curve of NECA-elicited cAMP formation was used to determine the initial choice of A2BAR antagonist concentration (online supplemental figure 2).
Computational modeling
A previously reported model of the A2BAR in complex with the reference antagonist ISAM–140 was the starting point to investigate the binding mode of the antagonists here reported.31 Briefly, the inactive hA2BAR conformation was generated by homology modeling based on curated alignment with the A2AAR, of known structure, followed by some refinement steps as previously described.28 32 The initial binding orientation of ISAM–140, initially obtained by automated docking with GOLD,30 was herein refined with a round of MD simulations, consisting of: (i) insertion of the A2BAR-ISAM–140 complex on an atomistic model of the membrane, solvation, and a 5 ns MD equilibration protocol as implemented in the PyMemDyn module of the GPCR-ModSim webserver;33 (ii) a short MD equilibration of the binding site, consisting on a 25 Å radius solvated sphere with the software Q34 as detailed in online supplemental information. The remaining ligands were modeled in the equivalent stereoisomer and aligned with the ‘Flexible Ligand Superposition’ in Schrödinger35 to this pose of ISAM–140. Each complex was subject to the same MD equilibration of the binding site outlined for ISAM–140, with representative snapshots shown in figure 1C.
PBMC and immune cell isolation
Peripheral blood mononuclear cells (PBMCs) were isolated from healthy blood donors’ buffy coat and patient’s blood after Ficoll density gradient centrifugation (GE Healthcare). NK cells were isolated using MACS MicroBead Human NK cell isolation kit (Miltenyi Biotec).
Tumor tissue processing and cell lines
Fresh tumor tissue resections were digested and processed into single cell suspension using gentleMACS tumor dissociation kit (Miltenyi Biotec). Tumor cells were then isolated by negative selection using a tumor cell isolation kit (Miltenyi Biotec). Adherent cells were passaged at least five times before being used for experiments. All cell lines were maintained in RPMI 1640 or DMEM GlutaMAX media (Thermo Fisher Scientific) supplemented with 10% HyClone fetal bovine serum (FBS) (GE Healthcare) and 1% Penicillin Streptomycin (PS) (Life Technologies). A tumor cell line and TIL culture from a breast cancer specimen was established as previously described.36 Human osteosarcoma cell line U2OS (ATCC) was used in comparison to patient-derived sarcoma cell lines for relative adenosine production and ADO ectonucleotidase expression by flow cytometry.
Expansion of tumor infiltrating lymphocytes
Digested tumor resections were cultured in suspension with 5% human serum in AIM-V (Thermo Fisher Scientific) or X-VIVO20 (Lonza) media supplemented with 3000 IU/mL of IL-15 (Novartis). After 7 days, irradiated PBMCs (100 Gy) pooled from at least three healthy donors were added as feeder cells at 200:1 ratio with addition of anti-CD3 functional grade antibody and 500 IU/mL of IL-15. After an additional 10 days of culture, TILs were harvested and analyzed for purity using flow cytometry and maintained with 500IU/mL of IL-15.
Cell viability assay (Cell-Titer Glo)
From breast cancer single cell suspension, 3×103 cells were seeded and cultured in an ultra-low attachment 384-well plate (Corning) with DMEM-F12 media (Thermo Fisher Scientific) containing 20% FBS and 1% PS. Treatment with A2BAR antagonist at various concentrations are stated in the Results section. After 4 days, Cell-Titer Glo reagent (Promega) was used to measure cell viability in accordance to the manufacturer’s instruction. EnSpire Multilabel Reader (PerkinElmer) was used to read the luminescence.
Proliferation assay with exogenous adenosine
Freshly isolated PBMCs and NK cells were stained with 5 µM FITC-conjugated carboxyfluorescein succinimidyl ester (CFSE, BioLegend) in phosphate-buffered saline (PBS) (Life Technologies) at room temperature for 5 min. CSFE stained cells were washed with flow cytometer buffer three times. CSFE-labeled healthy PBMCs and NK cells were cultured in 96-well plates with X-VIVO20% and 1% PS for 3 and 6 days, respectively. Healthy PBMCs were incubated with Human T-activator CD3/CD28 beads at 1:4 ratio (Thermo Fisher Scientific) and IL-2 (Novartis) at 100 IU/mL. Healthy donor NK cells were incubated with 1000 IU/mL IL-2 only. 2×105 PBMCs and 5×104 NK cells were counted for treatment with ADO (Sigma-Aldrich) and 12 μM of A2BAR antagonist at the same day.
Proliferation assay with CD73-expressing patient-derived sarcoma spheroid
A malignant peripheral nerve sheath tumor (MPNST) patient-derived sarcoma cell line was used to grow spheroid by seeding 1×104 cells per well in a 96-well ultra-low attachment plate (Thermo Fisher Scientific) with DMEM-F12 media containing 20% FBS and 1% PS for 5 days. 1×105 CSFE-labeled healthy PBMCs, ratio of 10:1, were added to the CD73 expressing, adenosine-producing spheroid at day five. Similar to the proliferation assay with exogenous ADO, CD3/CD28 beads at 1:4 ratio and IL-2 at 100 IU/mL were added. A2BAR antagonism treatment at 12 μM was added at the same day.
Spheroid infiltration by autologous TILs
Spheroids were prepared using patient-derived sarcoma cell lines. 1×104 cells were seeded per well in 96-well ultra-low attachment plate with DMEM-F12 media containing 20% FBS and 1% PS for 5 days. 3×104 CSFE-labeled autologous expanded TILs, at Effector:target ratio of 3:1, were added to the spheroid at day five with A2BAR antagonism treatment at 12 µM. After 3 days, spheroid was removed and split into two groups—IN and OUT. IN indicates TILs infiltrated into the sphere, while OUT indicates TILs that did not infiltrate into the sphere. Spheroids were washed with PBS at least two times. GentleMACS tumor dissociation kit (Miltenyi Biotec) was used to digest the spheroids for FC analysis.
Real-time imaging
Brightfield and phase contrast images under 4X objective were acquired every 6 hours on IncuCyte S3 system (Essen BioScience). For breast cancer patient-derived spheroid culture, 1×104 cells per well were seeded with A2BAR antagonist at 12 µM treatment for 6 days real time imaging. For spheroid infiltration, after the addition of CSFE-labeled autologous expanded TILs and treatment with A2BAR antagonist at 12 µM, green fluorescence images were acquired for 3 days. All spheroid invasion analysis was performed using top hat segmentation with IncuCyte software.
Extracellular ADO uptake assay via pAMPK staining
Experimental setup was adopted from a previous study whereby AR antagonist was added to pretreat cells before exogenous adenosine treatment for intracellular and cytokine staining.37 In brief, PBMCs were treated with 12 µM of A2BAR antagonists for 90 min before the addition of 50 µM of adenosine for 2 hours. Cells were harvested after 3 hours of CD3/CD28 bead stimulation before intracellular staining with phosphor-AMPK (Thr183, Thr172) rabbit primary antibody (Thermo Fisher Scientific) and antirabbit secondary antibody (BD biosciences).
IFNy and perforin cytokine production assay
Similar experimental setup was performed as the extracellular ADO uptake assay. Cells were harvested after 2 days of CD3/CD28 bead stimulation before treatment with PMA/ionomycin (Sigma Aldrich) and golgi-inhibitors (BD biosciences). After 3 hours of subsequent incubation, intracellular staining was performed for IFNy and perforin (online supplemental table 1).
Flow cytometry analysis
Cell surface was stained with mouse monoclonal antihuman antibodies against CD3, CD4, CD8, CD45RA, CD56 and CD19 listed in online supplemental table 1. Cell surface antibodies and live/dead (L/D) marker were incubated with samples at 4°C for 20 min after washing two times with flow cytometry buffer containing 5% FBS in PBS. For spheroid infiltrated TIL phenotyping, digested IN and OUT spheroids were stained with cell surface marker and analyzed on NovoCyte (ACEA Bioscience) with the use of FlowJo software (Tree Star) by gating single cell based on forward and side scatters. A representative gating strategy for CD8 naïve T cells is shown in online supplemental figure 3A. Compensated flow cytometry standard (FCS) files with only live cells were concatenated for downstream tSNE analysis using the ‘cytofkit’ R package (https://github.com/JinmiaoChenLab/cytofkit).
Statistical analysis
Experimental replicates are presented as mean±SD and median in box plot stated in the figure legend of the result section. Statistical analysis was performed using Prism 8 (GraphPad Software) and stated in figure legends.
Results
Synthesis and pharmacological characterization of potent A2BAR antagonists
The pyrimidine derivatives studied here were obtained using a modified procedure of the reliable Biginelli reaction,38 consisting of the catalyzed condensation of an aldehyde, a β-keto-ester and a 1,3-dinucleophile. The synthesis and binding data of SY1AF–30,29 SY1AF–80,29 SY1KO-2428 and ISAM-14030 (figure 1A) were recently described by our group in the context of a program to develop novel A2BAR antagonists. In addition, we present two previously undisclosed derivatives (ISAM–R56A and ISAM–R89A, figure 1A). These compounds are structurally related to ISAM–140 and they were discovered in the context of the structure activity relationship (SAR) exploration and structural diversification of the tricyclic scaffold present in this prototypical A2BAR antagonist. Besides providing distinctive and not-self-evident structural novelties, this pair of compounds offer interesting pharmacological data from quantitative (Ki in the low nM range) and qualitative (dual profile) points of view.
The synthetic pathway employed to prepare the novel A2BAR ligands is shown in figure 1A, where it can be observed that both transformations exploit the tautomerism present in the precursors. Briefly, treatment of ISAM–140 with 2-fluorobenzyl bromide under basic conditions produced a mixture of regioisomers (ISAM–R56A and ISAM–R56B) that was separated using column chromatography. The Biginelli-inspired ZnCl2-catalyzed condensation of 2-amino-5-chlorobenzimidazole, 3-furanecarboxaldehyde and isopropyl acetoacetate gave a (1:1) mixture of two tricyclic regioisomers (ISAM–M89A and ISAM–M89B) that differ in the position (7/8) of the halogen atom. The unequivocal assignation for each regioisomer was determined by NMR techniques.
The binding data obtained from the five A2BAR antagonists, the dual A2BAR/A2AAR ligand and the A2AAR clinical candidate (AZD-4635) are depicted in figure 1B. The previously reported A2BAR antagonists (SY1AF–30, SY1AF–80, SY1KO–24, ISAM–140) exhibit affinity values in the low nanomolar range (Ki=3.50–24.3 nM) and excellent subtype selectivity. Moreover, the diverse substitution pattern at the central pyrimidine scaffold provides chemical entities with different topologies, physicochemical features and distinctive binding modes, lately affecting its pharmacodynamic and pharmacokinetic profiles. ISAM–M89A and ISAM–R56A are novel non-xanthinic A2BAR ligands discovered during the detailed exploration of the SAR around the tricyclic scaffold of ISAM–140 by halogen introduction and N-alkylation, respectively.
The selected A2BAR and A2BAR/A2AAR ligands were tested in cAMP assays (figure 1B) to evaluate their ability to inhibit NECA-stimulated (100 nM) cAMP production. These experiments demonstrated that all of them inhibited cAMP accumulation, thus validating its A2BAR antagonistic behavior (figure 1B). A comparison of their Ki and KB values revealed complete agreement (data within 1–7-fold) between the binding and functional assays. Ectonucleotidases, in particular CD73, play a key role in the context of adenosine-mediated tumor immune escape.4 Consequently, we evaluated the effect of A2BAR ligands on the blockade of hCD73 as part of the pharmacological characterization of the selected A2BAR ligands (figure 1B). These experiments revealed that none of the five A2BAR antagonists, nor the A2A/A2B dual antagonist, showed any noticeable inhibitory effect on hCD73 (1 µM or 10 µM). These data excluded a dual A2BAR-CD73 inhibition, allowing us to attribute the pharmacological effects described below to the specific A2BAR antagonistic effect (or the dual A2A/A2B antagonism in the case of ISAM–M89A) of these ligands.
Binding mode of A2BAR antagonists
The binding mode of the three most potent compounds (ISAM–140, ISAM–R56A and ISAM–M89A) was investigated using a previously reported A2BAR homology model in complex with ISAM–140.31 Such a model could successfully explain the stereospecific recognition of trifluorinated derivatives (figure 1C), and the new antagonists ISAM–R56A and ISAM–M89A could indeed adopt an analogous binding mode within the orthosteric A2BAR cavity (figure 1C). In all three cases, the tricyclic core is stabilized by interaction with the AR conserved residues N2546.55 and F173EL2, a common denominator for AR ligands.39 Ligand ISAM–M89A specifically maintained a double hydrogen bond with N2546.55, allowing the chlorine atom in position eight to bind deeper in the binding pocket, surrounded by H2516.52, N1865.42 and Q903.37. The N1 substituted ISAM–R56A, which could only retain one hydrogen bond with N2546.55, presented, on the other hand, the extensive interactions of the 2-fluorobenzyl group in a A2BAR specific hydrophobic pocket located between TM6 and TM7, formed by residues V253(I)6.54, V250(L)6.51, A271(L)7.34, M2727.35, A2757.38 and I2767.39 (parenthesis indicating the corresponding A2AAR residues, if different). These specific interactions might explain the high affinity and the retained high selective profile for the A2BAR.
Blockade of A2BAR reduces patient-derived breast cancer spheroid growth
The expression of A2BAR gene (ADORA2B) was investigated using The Cancer Genome Atlas (TCGA)—Pan cancer publicly available dataset across 33 tumor types (online supplemental figure 4A–D). With high ADORA2B gene expression in breast cancer, the blockade of the adenosinergic pathway has been widely studied in breast cancer.40–49 To investigate if our novel A2BAR antagonists would affect breast cancer growth, we used a drug screening platform based on breast tumor resections.50 It is composed of majority tumor cells at 73.2%, with 11.2% immune cells based on flow cytometry analysis of EpCAM and CD45 expression, respectively (online supplemental figure 4E,F). On exposure to ISAM–140, ISAM–R56A and ISAM–M89A for 4 days, the relative cell viability of these breast cancer spheroids was significantly reduced with a more pronounced effect by ISAM-M89A (figure 2A). To confirm this, antagonist effects of the cell growth, the kinetics of the observed cytotoxic effect mediated by the antagonists was studied using real-time imaging within the same spheroid culture setting (figure 2B). With the low and middle antagonist concentrations being statistically equal in cell viability, the latter concentration of ISAM–140, ISAM–R56A and ISAM–M89A significantly affected the spheroid growth over time compared with untreated control (figure 2C). Despite the low CD3 T cell frequency in these tumor resections (online supplemental figure 4F), blockage of A2BAR still reduced cell viability and spheroid growth compared with untreated spheroids.
Blockade of A2BAR rescues adenosine-mediated suppression of T and NK cell proliferation
To elucidate if the antitumor effects observed by the A2BAR antagonists could alter lymphocyte activity, the different antagonists were added directly to T and NK cells in the presence of exogenous adenosine. While no statistical difference in viability at different adenosine concentrations was observed, a trend of decreasing viability with increasing adenosine concentration among CD8 T cell subsets was observed. Conversely, the viability of CD56 positive NK cells was not affected by adenosine (online supplemental figure 3B). However, a dose-dependent adenosine-mediated suppression of cell proliferation was observed across the different subtypes of T and NK cells with naïve CD8 T cells being the most affected (online supplemental figure 3C,D).
Due to its suppressive effect on cell proliferation without compromising viability, adenosine concentration at 0.1 mM was used to investigate the ability of the different A2BAR antagonists in rescuing adenosine-mediated suppression of lymphocyte proliferation. A subapoptotic concentration of 12 μM A2BAR antagonists was added to proliferating lymphocyte cultures (data not shown). ISAM–140 rescued the proliferation of CD45RA+ (naïve and effector) CD8 T cells, CD45RA- CD4 T cells (central and effector memory) and CD45RA+ CD4 T cells, and NK cells (figure 3). While ISAM–R56A did not restore the proliferation of T cell subsets, NK cell proliferation was significantly rescued. None of the other A2BAR antagonists (SY1AF–30, SY1AF–80 and SY1KO–24) had any measurable impact on the rescue of lymphocyte proliferation (figure 3). Similarly, the dual A2AAR/A2BAR antagonist ISAM–M89A or the A2AAR antagonist AZD–4635 did not restore the proliferation of either T or NK cells.
Given the different effects on proliferation across lymphocyte subsets, we hypothesized that the expression of A2AAR and A2BAR might differ accordingly. Flow cytometry analysis showed a highly donor-dependent variability of the expression intensity of A2AAR and A2BAR, and no significant difference in their expression was observed between the different lymphocyte populations (online supplemental figure 5). Similarly, the frequency of cells expressing A2AAR and A2BAR ranging between 10% and 20% did not differ between lymphocyte populations and was highly donor dependent (online supplemental figure 5E,F).
A2BAR antagonists inhibit extracellular ADO by downregulating pAMPK in T cells with upregulation of expression of CD69, IFNy, and perforin
To demonstrate the ability of A2BAR antagonists to inhibit extracellular ADO uptake in lymphocytes, one of the downstream cellular ADO signaling molecules—phosphorylated-AMP activated protein kinase (pAMPK) was analyzed in total CD4 and CD8 T cells (figure 4A,B). ISAM-R56A significantly downregulated pAMPK among both CD4 and CD8 T cells in the presence of exogenous ADO. Similarly, SY1AF-80 and ISAM-M89A significantly inhibited ADO uptake in CD4 and CD8 T cells, respectively.
With the rescue of adenosine-mediated suppression of lymphocyte proliferation, effector function through proinflammatory cytokines—IFNy and perforin, and the early activation marker—CD69 were successively examined. IFNy production by CD4 and CD8 T cells was successfully rescued by several antagonists (figure 4C,D). Similarly, perforin production by cytotoxic CD8 T cells was significantly upregulated on A2BAR antagonisms (figure 4E), of which, SY1AF-30 and ISAM-R56A significantly improved both IFNy and perforin production on adenosine suppression. CD69 expression, associated with early lymphocyte activation, was also increased (figure 4F,G) whereby ISAM-M89A had positive effect on both CD4 and CD8 T cells. Finally, both ISAM-R56A and ISAM-M89A rescued killing of breast cancer TILs against autologous tumor cells while ISAM-R56A also rescued killing in sarcoma TILs (online supplemental figure 6).
A2BAR antagonists rescue CD8 naïve T cell proliferation in adenosine-producing tumor spheroids
Sarcomas had the highest alteration frequencies for ADORA2B gene amplification as well as highest median copy number at DNA level when compared against 33 TCGA tumor types (online supplemental figure 4C,D). To investigate the effect of A2BAR antagonism on lymphocyte proliferation in a more physiological relevant model, a sarcoma spheroid model that produce endogenous adenosine to better mimic the TME instead of using exogenous adenosine was developed. The relative production of adenosine was validated in spheroids including patient-derived tumors and the commercial U2OS cell line (online supplemental figure 7A). The expression of the ectonucleotidases CD39 and CD73 was highest in primary tumor spheroids from undifferentiated pleomorphic sarcoma, myxofibrosarcoma, and malignant peripheral nerve sheath tumors (MPNSTs, online supplemental figure 7B). Based on these results, lymphocyte proliferation was analyzed in MPNST-derived sarcoma spheroids. In contrast to the rescue of lymphocyte proliferation observed with exogenous adenosine, the A2BAR antagonists SY1AF–30, SY1AF–80 and ISAM–R56A significantly rescued naïve and effector CD8 T cell proliferation based on CD45RA expression (figure 5).
A2BAR antagonism improves TIL infiltration into autologous patient-derived sarcoma spheroids
To increase the translational impact of the immunomodulatory effects of the A2BAR antagonists, their ability in rescuing adenosine-mediated suppression was tested in patient-derived ex vivo expanded tumor-infiltrating lymphocytes (TILs) and autologous sarcoma spheroids. These expanded TILs were mainly composed of CD4 and CD8 effector memory cells (online supplemental figure 7C–F). Real-time imaging showed the blockade of A2BAR, especially by ISAM-R56A, resulted in an overall improved TIL infiltration in comparison with untreated tumor spheroids (figure 6A,B). Although not statistically significant, both ISAM–R89A and AZD-4635 treatments resulted in a median increased infiltration of 7% and 20%, respectively, whereas ISAM–140 did not have any effect on TIL infiltration (figure 6B). To confirm the frequency of TIL infiltration, the spheroids were collected and analyzed for CSFE positive and CD73 negative TILs by flow cytometry. Despite a high variability, ISAM–R56A treatment showed significantly enhanced TIL infiltration into the spheroids (figure 6C).
With the recruitment and retention of T cells within the tumor, expression of adhesion molecules is required. Thus, the expression of tissue resident T cells markers- CD11a, CD49a, CD69 and CD103, was analyzed to gain insights into the phenotype of spheroid-infiltrated T cells. T-distributed stochastic neighboring embedding (tSNE) analysis revealed that the majority of infiltrating TILs are CD8 positive (cluster 1) and CD4 positive (cluster 9) T cells (figure 6D). Among them, the infiltrated CD8 T cells were enriched with 2.5-fold higher CD49a and CD103 coexpression, while no significant difference was observed, the infiltrated CD4 T cells showed an enrichment of CD69 (figure 6E–H). Furthermore, the total CD3 T cells were 20% greater inside the spheroid. To investigate the effect of A2BAR antagonism in modulating the phenotype of infiltrated TILs, various antagonists were added to the TIL-tumor spheroids. All antagonists increased the CD8/CD4 T cell ratio though it was statistically significant only in the presence of ISAM–140 (figure 6I). In contrast, no significant change in the expression of the adhesion molecules CD11a, CD69, and CD49a/CD103 between untreated and A2BAR antagonist-treated spheroid cultures was observed (figure 6J–L, online supplemental figure 8).
Discussion
While blockade of A2AAR is well documented to rescue T and NK cell proliferation, the effect of targeting the A2BAR in lymphocytes remains almost unexplored.8 13 16 Only recently, it was reported that A2BAR deficiency in tumor-bearing mice resulted in an increased infiltration of dendritic cells to promote cross-priming of adoptively transferred tumor antigen-specific T cells.21 A2BAR activation plays critical roles during tumor development including but not limited to proliferation, angiogenesis, invasion and metastasis, as well as immune suppression, which make the antagonists of this receptor hold great promise for the development of new polyvalent cancer therapeutics.5 6 To investigate lymphocyte activity on blockade of A2BAR, a set of five potent and selective A2BAR antagonists and a dual A2AAR/A2BAR antagonist were synthesized and evaluated. Herein, documented ligands were conceived in the context of a hit to lead program based on the 1,4-dihydrobenzo4 5 imidazo[1,2-a]pyrimidine scaffold. The obtained data highlight the potential of this scaffold to provide potent AR antagonists while illustrating how subtle structural modifications can strongly affect the affinity and selectivity profile of the novel ligands. The main SAR and selectivity trends identified within the series were substantiated by a molecular modeling study based on a receptor-driven docking model of A2BAR constructed based on the crystal structure specific of the human A2AAR.
Given the short half-life of endogenous adenosine,47 exogenous adenosine is still commonly used to study adenosine-mediated immunosuppression in the TME. In general, lymphocyte assays are based on phenotypic analysis and often complemented with read-outs to analyze canonical functions such as cell viability, proliferation and the ability to produce inflammatory cytokines as well as to recognize and kill target cells. Throughout these experiments, the A2BAR antagonists were evaluated in lymphocyte viability and proliferation assays. Since prognosis is often associated with the frequency of TILs,51–53 we developed two models to study the blockage of A2BAR in recusing antitumor immune responses. An exogenous adenosine in vitro healthy donor model and endogenously produced adenosine ex vivo patient-derived model were used to better study the dynamic crosstalk of adenosine in the TME as well as being clinically relevance. As a result, A2BAR antagonists successfully rescued antitumor immune response through cytotoxicity of patient-derived spheroid cultures, proliferation of lymphocytes and tumor spheroid immune cell infiltration accompanied with differences in phenotype.
The six ligands examined exhibited high A2BAR affinity and excellent selectivity profiles. Two of them (ISAM–R56A and ISAM–M89A) were herein originally reported, by introduction of a 2-fluorobenzyl group or a chlorine atom at positions 1 and 8 of the tricyclic core, respectively. Indeed, ISAM–R56A (Ki=1.50 nM) is confirmed as one of the most potent A2BAR antagonist published to date, while ISAM–M89A exhibited a highly promising dual A2BAR/A2AAR antagonistic profile (while devoid of affinity for the remaining AR subtypes). The selected ligands revealed negligible CD73 inhibitory action, thus allowing to attribute the herein observed effects to their specific A2BAR antagonistic effect. The high affinity of these compounds could be explained by a computational model of the A2BAR in complex with these ligand chemotype, which had been used in the design of these series of antagonists.
By exposure of these A2BAR antagonists to breast cancer patient-derived cells, their antitumor activity was first revealed through a reduced tumor spheroids growth rate. Despite the highly variable donor-dependent expression of A2ARs, the immunomodulatory effect of A2BAR antagonism was further demonstrated with the successful rescue of T and NK cell proliferation under exogenous adenosine-mediated suppression, with CD8 naïve T cell being the most responsive of the T cell types examined. These findings correspond to an adenosine-producing human melanoma cell line, showing higher suppression of CD8 T cell proliferation than CD4 T cells.54 A2BAR antagonists were subsequently shown to inhibit extracellular ADO uptake via downstream pAMPK in total CD4 and CD8 T cells. Even with varying adenosine susceptibility between donors, improved production of proinflammatory cytokines IFNy and perforin along with the expression of the activation marker CD69 was observed. In addition, the obtained discrepancies could be related with drug availability, binding kinetics and physicochemical properties, influencing a different cell response for drugs with similar affinity.
Patient outcome in various sarcoma types is shown to correlate with the presence of TILs.52 53 55 Patient-derived spheroids can retain the unique characteristic of the original tumor compared with 2D monoculture or patient-derived xenograft by enabling cell-cell and cell-extracellular interactions.56 57 Using a patient-derived sarcoma spheroids model, we observed that treatment with A2BAR antagonists improved autologous TIL infiltration into sarcoma spheroids. Tumor spheroid-infiltrating lymphocytes were enriched for the expression of the tissue resident markers CD49a and CD103 in CD8 T cells and CD69 in CD4 T cells.58 A recent study identified a unique population of CD8 TILs coexpressing CD39 and CD103 that were reactive against both primary and metastatic tumors.59 Another study defined CD8 tissue resident T cells in human epithelia with cytotoxic function to express CD49a and correlate with inflammatory skin diseases.60 In vivo A2AAR antagonism has also been reported to upregulate the expression of CD69 on TILs, while A2BAR antagonism enhanced CXCR3-dependent TIL responses.61 62 Notably, a recent study demonstrated that adenosine can mediate functional and metabolic suppression of tumor-infiltrating CD8+ T cells.37 Thereby, A2BAR antagonism not only potentially increase TIL infiltration into solid tumors through modulation of adhesion molecules but may also improve the overall metabolic fitness of tumor-infiltrating T cells.
ISAM–140, a potent and highly selective A2BAR antagonist (Ki=3.49 nM), was shown as an optimal A2BAR binder by computational modeling and proved to be an efficient antagonist in functional cAMP assay.30 We here demonstrate that this compound exerts biologically improved immune cell proliferation on T and NK cells in an A2BAR expression independent manner in healthy donor PBMCs. This response was dose-dependent with a higher concentration further restoring proliferation (data not shown). This lymphocyte proliferation rescue was accompanied with upregulated IFNy production in both CD4 and CD8 T cells. ISAM–140 was also non-toxic and even improved cell viability (data not shown). In addition, a novel A2BAR antagonist—ISAM–R56A, with Ki to the A2BAR similar to the corresponding A2AAR value of the preclinical A2AAR antagonist—AZD–4635 (1.50 nM vs 1.70 nM, respectively), improved TILs infiltration into autologous patient-derived sarcoma spheroids. CD8-naïve T-cell proliferation response was also observed in the adenosine-producing spheroid model, while a specific NK cell proliferation response was noted in the exogenous adenosine assay. CD8 T cell IFNy and perforin production was also significantly rescued under exogenous adenosine suppression. Thereby, the potential of ISAM–R56A to induce tumorous TILs infiltration is highly promising. This induction of tumorous CD8 T cell infiltration was already observed from the clinical trial of a dual A2AAR/A2BAR antagonist–AB928 combined treatment with anti-PD1.63
Conclusion
With only one A2BAR antagonist currently registered in a clinical trial,3 our findings close the gap of lacking alternatives and provide insights to practical readouts related to adenosine-mediated immune suppression. We established a systematic workflow to screen novel small molecule antagonists that enabled the identification of ISAM–R56A as the most potent candidate for A2BAR blockade. With ISAM–R56A, cytotoxic immune cells can be relieved from adenosine-mediated suppression to proliferate and infiltrate into adenosine-producing solid tumors expressing CD73. Besides using appropriate immunocompetent or xenograft in vivo models to evaluate the pharmacology and preclinical safety of these novel small molecule antagonists as potential complements to existing immunotherapies, future directions on downstream hypoxia-HIF-1a of A2AR-cAMP signaling axis shall be mimicked in in vitro and ex vivo assays.
Data availability statement
Data are available on reasonable request.
Ethics statements
Patient consent for publication
Ethics approval
Buffy coat and plasma from anonymized adult healthy blood donors was obtained from Karolinska University Hospital Blood Bank. For surgical resections of sarcoma and breast tumors, ethical approval (#2013/1979-31, #2016/957-31, #2017/742-32) from Karolinska Institutet Ethical Review Board and patient’s informed consent were obtained in accordance with the Declaration of Helsinki.
Acknowledgments
Support from the Swedish strategic research program eSSENCE, the Swedish Cancer Society (#CAN 2018/451), and The Cancer Research Fundations of Radiumhemmet (#181183) is acknowledged. The computations were performed on resources provided by the Swedish National Infrastructure for Computing (SNIC). This research program has been developed in the frame of the European COST action ERNEST (CA 18133).
References
Supplementary materials
Supplementary Data
This web only file has been produced by the BMJ Publishing Group from an electronic file supplied by the author(s) and has not been edited for content.
Footnotes
Twitter @bentoaz, @hugogdtc
AHMT and RP-D contributed equally.
Correction notice This article has been corrected since it was first published online. The x-axis on figures 4B, D, F and G has been updated.
Contributors AL and ES conceived, designed, and supervised the study and acted as guarantors. RP-D, MM, JA and XG-M participated in the synthesis and characterization of the ligands. AHMT, SN, LT, XC and JH performed the cellular and immunological studies. JMB and MIL evaluated the binding affinity and CD73 activity. HG-d-T and WJ performed the computational assays. AHMT, RP-D, AL, and ES analyzed the data and written the manuscript. All authors have given approval to the final version of the manuscript.
Funding This work was financially supported by the Consellería de Cultura, Educación e Ordenación Universitaria of the Galician Government: (grant: ED431B2017/70), Centro singular de Investigación de Galicia accreditation 2019-2022 (ED431G 2019/03), and the European Regional Development Fund (ERDF), the Swedish Research Council.
Competing interests None declared
Provenance and peer review Not commissioned; externally peer reviewed.
Supplemental material This content has been supplied by the author(s). It has not been vetted by BMJ Publishing Group Limited (BMJ) and may not have been peer-reviewed. Any opinions or recommendations discussed are solely those of the author(s) and are not endorsed by BMJ. BMJ disclaims all liability and responsibility arising from any reliance placed on the content. Where the content includes any translated material, BMJ does not warrant the accuracy and reliability of the translations (including but not limited to local regulations, clinical guidelines, terminology, drug names and drug dosages), and is not responsible for any error and/or omissions arising from translation and adaptation or otherwise.