Table 2

Sequence of HSV1 5’leaders identified in this study (Hoang et al)

Gene name (strand)5'leader length5'leader sequence
UL1+92gatacggggcttgtgtggcacgacgtcgtggttgtgttactgggcaaacacttggggactgtaggtttctgtgggtgccgaccctaggcgct - atg
UL2+145agtcgcaagcaggccgccagccacacacctgtgaaggctgggtgtgtgaactttgactattcgcgcacccgccgctgtgtagg
gcgacaggatttgggacctaccaacggaacgtctggacggaccccggttctgccgccggacg - atg
UL3+221gccatcaggccggaccctcgggtccattgcgtcctcaagttttcgcacccgtcgcccctctccaaggttccgttcggaacctgccagc
atttcctcgtggcgaaccgatacctcgagacccggtcgatttcacccatcgactggtcggtttgaaaggcatcgacgtccggggtttttgtcggtgggggcttttgggtatttccgatgaataaagacggtta - atg
UL4-72attgtctattaacccgccgtccccttacagttccaccgaacccggcccgggggactcactacccaccgcgag - atg
UL5-450gggccgcccggcgcaaagcaggcgaccaacccgtgggcaaagtccagcagcgtcgtcctaagcgtgttccgccacgtgtc
gaacacccgctcggccaccccggcgatatccgcctcccgggcgttcctgtaccggcgaaccagccgttggggctgcagaccgcgggccgccacgtggccgagccagtc
cgcctcgaggtcccggtaagtggtggcgttgaggagcgcgtgaaagatcgccgcctgcagctgccgggtggtcgcctcgctggaccggacgacgttgtacaccccctggccc
tcggtataccccagctgcccgtggagaatctcgcggaacagcatcgtaccggggctggggtgaacctttacccagccgtcctcgggggagcacagcgcttccgtgtccccccgcg
cacgcgtagtgggggcccgcgagcgtggtgcggtc - atg
UL6+98cggccctccctggaacggctggtcggtccccgggttgctgaaggtgcggcgggccgggtttctgtccgtctagctggcgctccccgccggccgccgcc - atg
UL7+179gacagacatcgcggccctgttcgtcgcggacgtccagcacgcagcgctgcccccgcccccctccccggtcggcgccgatttccggcccggcg
cgtccccgcggggccggtccagatcgcggtcgcccggaagaactgcgcgaggcgcgccggaccagggcgggggcatcgggcaccggg - atg
UL8-203acgtggtcgtccgcggaccggcggcgctgttgccggaacgcaccgaggggccaagttggcccccggacccgggccgtttcccacccccaccc
caaccccaaaaaccgccccccccccgtcaccggtttccgcgacccaccgggcccggccaggcacggcagcatgggacccacagaccgcccgtgatccttaggggccgtgcg - atg
UL9-99acagaggccaggacgaggagccccgtgacgcagaccgcagagaccacaaacgtcgccacctgcacacaccagacccaccacgccgtccgcgccccggtc - atg
UL10+261acactcgtgtccggagagtggatcgcttcccgcagccagcggatcagcgcggtagtttttcccgaccccattggcgcgcggaccacagtcacgcacc
tggccgtcggggcgctcgcgttggggaaggtgacgggtccgtgctgctgccgctcgatcgttgttttcgggtgaacccggggcacccattcggccaaatcccccccg
tacaacatccgcgctagcgatacgctcgacgtgtactgttcgcactcgtcgtcccca - atg
UL11-407ctgtttggcgcccccgacctcggacgccacaccatctcccccgtgtcctggagctccggggatctggtccgccgcgagcccgtcttcgcgaa
cccccgtcacccgaactttaagcagatcttggtgcagggctacgtgctcgacagccacttccccgactgccccccccacccgcatctggtgac
gtttatcggcaggcaccgcaccagcgcggaggagggcgtaacgttccgcctggaggacggcgccggggctctcggggccgcaggaccca
gcaaggcgtccattctcccgaaccaggccgttccgatcgccctgatcattacccccgtccgcatcgatccggagatctataaggccatccagc
gaagcagccgcctggcattcgacgacacgctcgccgagct - atg
UL12-158actgtcgtcggtggcgctgcctcccgagcttaagcctctcctggtgctggtgtcccgcctgtgtcacaccaacccgtgcgcgcggcacgcgctgtc
gtgagaatcagcgttcacccggcggcgcgctcaaccaccgctccccccacgtcgtctcggaa - atg
UL13-155cgtcgtgactttctaaccgcacaccgacggtacctcgatccggcgcttggtgagcgcctggacgccgtggacgatcgtcttgcggacc
aggaggagcaactcgaggaagcagcgaccaacgcttctctgtggggagacggcgacctggccgaagg - atg
UL14-334gagaagagcggcgagtgctcgcagcagtcgtggagcgtcccgacgccagggaccacggtctggtggcgcttgggggtcgcggt
cgcgaaatctaaaaagggcactcgtagggcatcgccgcccatggtgaggcccgccgacgcctcgtccgcgcccaccttaagttgcctc
tgtttctcgaggcgctccaggtactgctggacgtcggacgccagctgctgaccaaacatcgcgcacaccgggtggcgggtcgcggcggc
gaagtaccccgatcacgggccttgggcacgcgagactatcagagcaccccccgggtcgcccgcagggtggcgga - atg
UL15+219gggtgctgacgccctcccggtgcagctgcagggtctggtccttgtaaatctcggctcggaggtgcgtctcggccaggcgtcggcgc
agggccgcgtgggcggcatctcggtccattccgccaccctgcgggcgacccggggggtgctctgatagtctcgcgtgcccaagg
cccgtgatcggggtacttcgccgccgcgacccgccacccggtgtgcgcg - atg
UL16-312acagccccacgcagggtctgcgagcaatacctgcccggggaaagctacgcctacctctgcctggggtttaatcgccgcctctgtgg
catagttgtctttcccggcggctttgcgttcaccattaacatcgcggcctaccttagcctctcggaccccgtcgcgcgggccgctgtcctta
ggttttgtcgcaaggtgtcgtccgggaacggccggtctcgctagcgggcgccttcccccggccacctcgcccacccactcctccccg
cgccgttggcccccgcctctggggtttgccctccccccgcccccggc - atg
UL17-222agcccataatcgtctggaccgcatccgggcgaataaagttggcctcgtcgacaaagagcaggttaaagtcctggcctcggatt
ccctagagacagaagaaacgcgccgcgcataagcacgcacgcctccgttggcgaatacgcatacgcgcgccaaacccac
gcccttcccgcggactcgggggacccgcatcgcctacacacccacacccacccccgaacc - atg
UL18-198ggattcgctctcggtgcgtctgggcccgacagacctccccgcgcatgctctggggtccctgtcgcctcccaaccccctaag
acccaccccccgtcctatgcgaggttggtcgcccgtctctgctacgccgctgacccccaccgcgctcctcccgccacccgaa
ccaccactgcactccctgccgcgtggatcggcgcc - atg
UL19-239ggtctgttggggacactgggttctcctggaacgaggccgcagccttctcccggtgcctttcccccccgaccggcacccgg
cctctcacacagcatcccccgcctttttgggtccgggcccgtcgtgtctttcggtggaccttgggccgtc gggcacgtacacgggt
ggccgggcgttggggtggatcttagcctccccgggccaatatcgctagagacagccgatctccacgcgacccc - atg
UL20-125actcgcctccgcggatgcaacccgggtggtgtttgtgcaagaacccgggtgtctttgatctcgggatcctgctgacgtaagcgac
cctttgcggtttcggtctccccacctccaccgcacacccc - atg
UL21+211tcgttgtattcgagacctgcctgtgcaacgcacgtcggggttgcctgtgtccggttcggcccccaccgcgtgcggcacgcacgagga
cgagtccgcgtgctttattggcgttccaagcgttgccctccagtttctgttgtcggtgttcccccatacccacgcccacatccaccgtagg
gggcctctgggccgtgttacgtcgccgcccgcg - atg
UL22-199ataaacgcggggttcggtcccagggctggcactctgtcgataccccaccgagaccccattgggaccaatacgcccgcgtttcttcc
ttttccccaccccaacccccaagttcgggtgaaggcccagggctcgcagccaacgtcggggcggcaagccctgccatagccacg
ggccccgtgggttagggacggggtccccc - atg
UL23-107accgagcgaccctgcagcgacccgcttaacagcgtcaacagcgtgccgcagatcttggtggcgtgaaactcccgcacctctt
cggccagcgccttgtagaagcgcgt - atg
UL24+378cccagcctcccccccgatatgaggagccagaacggcgtcggtcacggcataaggcatgcccattgttatctgggcgcttgt
cattaccaccgccgcgtccccggccgatatctcaccctggtcgaggcggtgttgtgtggtgtagatgttcgcgattgtctcggaagc
ccccaacacccgccagtaagtcatcggctcgggtacgtagacgatatcgtcgcgcgaacccagggccaccagcagttgcgtgg
tggtggttttccccatcccgtggggaccgtctatataaacccgcagtagcgtgggcattttctgctccaggcggacttccgtggctttttg
ttgccggcgagggcgcaacgccgtacgtcggttgtt - atg
UL25+739gcaaacgcgagcaacgggccacggggatgaagcagctgcgccactccctgaagctcctgcagtccctcgcgcctccgggtgaca
agatagtgtacctgtgccccgtcctggtgtttgtcgcccaacggacgctccgcgtcagccgcgtgacccggctcgtcccgcagaaggtc
tccggtaatatcaccgcagtcgtgcggatgctccagagcctgtccacgtatacggtccccattgagcctaggacccagcgagcccgtcgc
cgccgcggcggcgccgcccgggggtctgcgagcagaccgaaaaggtcacactctggggcgcgcgacccgcccgagtcagcggccc
gccagttaccacccgccgaccaaacccccacctccacggagggcgggggggtgcttaagaggatcgcggcgctcttctgcgtgcccgtg
gccaccaagaccaaaccccgagccgcctccgaatgagagtgtttcgttccttccccctccccccgcgtcagacaaaccctaaccaccgctt
aagcggcccccgcgaggtccgaagactcatttggatccggcgggagccacccgacaacagcccccgggttttcccacgccagacgccggt
ccgctgtgccatcgcgccccctcatcccaccccccatcttgtccccaaataaaacaaggtctggtagttaggacaacgaccgcagttctcgtgtgtt
attttcgctctccgcctctcgcag - atg
UL26+158gctccagtcccggcccggcggttggcgtgaacgcaacggcgggagctgggttagcgtttagtttagcattcgctctcgcctttccgcccgccc
cccgaccgttgcgcctttttttttttcgtccaccaaagtctctgtgggtgcgcgcatggcagccg - atg
UL26.5+93ataccgcccggctcgatcgctgccgcgccgcagggtgaccggtgcccaatcgtccgtcagcgcggggtcgccttgtccccggtactgcccccc - atg
UL27-286acactctttgcctcggtctaccggtgcggggagctcgagttgcgccgcccggactgcagccgcccgacctccgaaggtcgttaccgttac
ccgcccggcgtatatctcacgtacgactccgactgtccgctggtggccatcgtcgagagcgcccccgacggctgtatcggcccccggtc
ggtcgtggtctacgaccgagacgttttctcgatcctctactcggtcctccagcacctcgcccccaggctacctgacggggggcacgacggg
cccccgtagtcccgcc - atg
UL28-270ggggaatgtgtgtaaaataaattattgctacgacatccgtgcttgtttgtgttccgtgtctatatctctgggcgggccgtgattcctctccg
cggtgtctgggaatagagcagaaacgcacgcgccgccgactcccggcttgccggtcggcgggcccgcgggaggccgccccg
aagagggggaccccggggctcagccagacgccgggtagcgtacggaccgcctcggtccaccgcatactccggccgcggtac
agatcggcgccgcgag - atg
UL29-262cgacccggagcacctgaccgtaagcatctgtgcctctcgcagggaccccgcgttgccggccgccggggttcatcggcgacccc
gtggttacccggggggttgtcggtgaaggggagggattcattccccaaccccggtctccaaccctccccttgaccgtcgccgccccc
ccccggattttgacgctcgggagacataccttgtcgggcgtccgtcgtcgtgccgggattacctccgttcgcggaccgattgacaaaaggac - atg
UL30+202gaataaaccgggccgccggccggggcgccgcgcagcagctcgccgcccggatccgccagacaaacaaggcccttgcac
atgccggcccgggcgagcctgggggtccggtaattttgccatcccacccaagcggctttttgggtttttctcttcccccctccccacat
tcccctctttaggggttcgggtgggaacaaccgcg - atg
UL31-79acatttgtccgtgaggcgggcgcgctgcttagacgccactcgatctcgctcctgtccctggagcacaccctgtgtacct – atg
UL32-58gcagtcggggattgtgtcccgtaaagttcgctggcgcgtgcgcccctcccgcccagcc - atg
UL33+96acatacgcgcgctcgaacgcccccgccttccagctgctgccgggggactcttcgcacaccgcgacgctcg
ccaggaccccggggggcgaagttgcc - atg
UL34+191gcagaccccggacaccgcgtgtgtgcacggcgagctgctcgccgccaagcgggaaagattcgcggcggtcattaaccggttc
ctggacctgcaccagattctgcggggctgacgcgcgtgctgttgggcgggacggttcgcgaaccctttggtgggtttacgcgggcacgcacgctcccatcgcgggcgcc - atg
UL35+80gccagtgcgttccggacgccttcgccccacacagccctcccgaccgacacccccatatcgcttcccgacctccggtcccg - atg
UL36-75gtgggtggcggaaacaacactaaccccgggggtccggtccataaacaggccgggtctctggcccgcagggcacat - atg
UL37-131gcaacgcctgcgggggtcctggagggccgcgggggatcgataattcgccgctccctacagcgcacgacagtcattcccgcccggt
ctcgtcgttggtctacgctgtcccccacccacgcgagccgggcgtc - atg
UL38+130caacacaacccaccggaggcggtagccgcgtttggctgtggggtgggtggttccgccttgcgtgagtgtcctttcgacccccccccc
cctccctcccccgggtcttgctaggtcgcgatctggggtcgca - atg
UL39+226ccacaggtgggtgctttggaaacttgccggtcgccgtgctcctgtgagcttgcgtccctccccggtttcctttgcgctcccgccttcc
ggacctgctctcgcctactcttctttggctctcggtgcgattcgtcaggcagcggccttgtcgaatctcgaccccaccactcgccgg
acccgccgacgtcccctctcgagcccgccgaaacccgccgcgtctgttgaa - atg
UL40+151actactgcaaggttcgcaaggcgaccaacagcggggtctttggcggcgacgacaacattgtctgcatgagctgcgcgctgtga
ccgacaaaccccctccgcgccaggcccgccgccactgtcgtcgccgtcccacgctctcccctgctgcc - atg
UL41-119cctcttgtgtcggtgttgttgtctgggtcaccatacacagagagacaggctcgggtgtcccggaccgtcgcaccaaccacg
ccttagttaggccgatccgcagttacaattgacctgac - atg
UL42+178cgtagtttctggctcggtgagcgacggtccggttgcttgggtcccctggctgccatcaaaaccccaccctcgcagcggcatacg
ccccctccgcgtcccgcacccgagaccccggcccggctgccctcaccaccgaagcccacctcgtcactgtggggtgttcccagcccgcgttggg - atg
UL43+34gtgtatttcctttccctgtccttataaaagccgt - atg
UL44+142ccctcactatcgagggcgcttggtcgggaggccgcatcgaacgcacacccccatccggtggtccgtgtggaggtcgttttca
tgcccggtctcgctttgccgggaacgctagccgatccctcgcgagggggaggcgtcgggc - atg
UL45+79atccttggtcgatcccgaacgacacacggcgtggagcaaaacgcctccccctgagccgctttcctaccaacacaacggc - atg
UL46-43ggcataactccgaccggcgggtcccgaccgaacgggcgtcacc - atg
UL47-194catttggccgggggctggggcggcgggtagccttcgcgggagatactgcgtttttttgcgccggccccgtcgctcccgtccat
tcccatcgcgagggggtccggcggcacctaccccggcctccatccgcgctgtggggtctttttcttttttggggggtagcgga
catccgataacccgcgtctatcgccacc - atg
UL48-179cattcctcgggaacggacggggttcccgctgcccacttccccccataaggtccgtccggtcctctaacgcgtttgggggttttct
cttcccgcgccgtcgggcgtcccacactctctgggcgggcggggacgatcgcatcaaaagcccgatatcgtctttcccgtatcaaccccaccca - atg
UL49-150gccactcacgcatccccagtgggttttgcggaccctctcttctctcccgggccgcccctatcgctcgacctctccacacctgcacca
cccccgccgtccgaacccaggcctaattgtccgcgcatccgaccctagcgtgttcgtggaacc - atg
UL49A-135aggttcagttgcacgactccgcccccgcgagtagcgacggccgtgtgccagtcgccatcgtacccccgacccaag
ctgtccggctggacaaggatcgccccggatccccactgactcatcttcctgttagggacg - atg
UL50+181agacatttggccagtgttttgggtctcgcaccgcgcgcccccgatcccatcgcgcccgccctcctcgccgggcggctccc
cgcgcgggcccgcgtctcccgccgctaaggcgacgagcaagacaaacaacaggcccgcccgacagacccttctgggggggcccatcgtccctaacaggaag - atg
UL51-294gccatttagcccgcccgacgcttggtagagcgcccgactctcttcgaacctgtcttgctccgtgggcccgtcggcacggc
catcgtgcgtgtatgcgtcgtagctgaatatataaaccggctcggcccccagtagagagtttgtgaggagggcgatcgaag
aggtaataacgcacccgtcggtcgcataaagcgcggtcacctccacgggagtcccggccgcccgcctctccccgcggtt
cccgtcttcctgccccattgcgtccgcgcgcccaagggccagtacccgcccgcg - atg
UL52+63acatatagccccgagaagagaagccatcgcgggcgggtactggcccttgggcgcgcggacgca - atg
UL53+236agtaaggacgactgggtcctcctacagctagtccccgttcgcggtaccctgcagcaaagcctgtcgtgtctgcgcttt
aagcacggccgggcgagtcgcgccacggcgcggacattcgtcgcgctgagcgtcggggccaacaaccgcctgtg
cgtgtccttgtgtcagcagtgctttgccgccaaatgcgacagcaaccgcctgcacacgctgtttaccattgacgccggcacgcc - atg
UL54+139ggtggtgtgcagccgtgttccaaccacggtcacgcttcggtgcctctccccgattcgggcccggtcgctcgctaccggtgcg
ccaccaccagaggccatatccgacaccccagccccgacggcagccgacagcccggtc - atg
UL55+52gtcatagtgcccttaggagcttcccgcccgggcgcatccccccttttgcact - atg
UL56-158ggttgggcgacgcatgccagcccaacaaaatccgccggggtgccagtcccattcccgaaggcgtagcccgttaacttggc
tggcttggatggggagtagggccttttccattaccccaaggacctagcgcgcgggagtcgtggctttggggcgcatcc - atg
RL2-146tcgcatttgcacctcggcactcggagcgagacgcagcagccaggcagactcgggccgccccctctccgcatcaccacag
aagccccgcctacgttgcgacccccagggaccctccgtccgcgaccctccagccgcatacgaccccc - atg
RL1-104cccccgcggccgagactagcgagttagacaggcaagcactactcgcctctgcacgcacatgcttg
cctgtcaaactctaccaccccggcacgctctctgtctcc - atg
RS1-301ccacacggagcgcggctgccgacacggatccacgacccgacgcgggaccgccagagacagaccgtcagacgctcgccg
cgccgggacgccgatacgcggacgaagcgcgggagggggatcggccgtccctgtcctttttcccacccaagcatcgaccgg
tccgcgctagttccgcgtcgacggcgggggtcgtcggggtccgtgggtctcgccccctccccccatcgagagtccgtaggtg
acctaccgtgctacgtccgccgtcgcagccgtatccccggaggatcgccccgcatcggcg - atg
US1+517gcagacggcgccggccacgaacgacgggagcggctgcggagcacgcggaccgggagcgggagtcgcagagggccg
tcggagcggacggcgtcggcatcgcgacgccccggctcgggatcgggatcgcatcggaaagggacacgcggacgcggg
ggggaaagacccgcccaccccacccacgaaacacaggggacgcaccccgggggcctccgacgacagaaacccaccgg
tccgccttttttgcacgggtaagcaccttgggtgggcggaggagggggggacgcgggggcggaggaggggggacgcggggg
cggaggaggggggacgcgggggcggaggaggggggacgcgggggcggaggaggggggacgcgggggcggaggaggggg
ctcacccgcgttcgtgccttcccgcaggaggaacgtcctcgtcgaggcgaccggcggcgaccgttgcgtggaccgcttcctgctcg
tcgggcggggggaagccactgtggtcctccgggacgttttctgg – atg
US2-376gacggctttgtctccggcgggacggcctcctccttcctcctgccctgtcccccgtaaacgcgacaaaacttacgacaggccatt
cgccgcaccgtgagtgccaaccaacgagcaccccgaacgacgggccccggggttttaaggagcggcagtttgacgaccca
ccccctgacctacccccccgtaaatcaccctcccctcccccggacgcctccgctgccggtcgctccaagggcccccccggg
aaggcgggtctgtggaccgtagggcccttaaatttttagagcagcccccgcgtcggcctgtctccccgccgtgcgtggcctt
acaaatctgcaagtgccccaaatcggacacgggcctgtaatataccaac - atg
US3+258acttgcagatttgtaaggccacgcacggcggggagacaggccgacgcgggggctgctctaaaaatttaagggccctacgg
tccacagacccgccttcccgggggggcccttggagcgaccggcagcggaggcgtccgggggaggggagggtgatttac
gggggggtaggtcagggggtgggtcgtcaaactgccgctccttaaaaccccggggcccgtcgttcggggtgctc
gttggttggcactcacggtgcggcga - atg
US4+12gtttttggcatc - atg
US5+106gcgcgacttccgggcctcagaacccacccgaaacggccaacggacgtctgagccaggcctggctatcc
ggagaaacagcacacgacttggcgttctgtgtgtcgcg - atg
US6+81ggtcataagcttcagcgcgaacgaccaactaccccgatcatcagttatccttaaggtctcttttgtgtggtgcgttccggt - atg
US7+89gtggacagtcgataagtcggtagcgggggacgcgcacctgttccgcctgtcgcacccacagctttttttgcgaaccgtcccgttccggg - atg
US8+74tcttctggcgggttggtgcggtgctgtttgttgggctcccattttacccgaagatcggctgctatccccgggac - atg
US8A+118acgtacattcgcgtggccgacagcgagctgtacgcggactggagctcggacagcgagggagaacgcgaccagg
tcccgtggctggcccccccggagagacccgactctccctccacca - atg
US9+65agcaaattaaaaatcgtgagtcacagcgaccgcaacttcccacccggagctttcttccggcctcg - atg
US10-69accccagaggtgttcacgcacctcgaggacacccgcgcatgatctccggacccccgcaacggggtgata - atg
US11-215ggccagaaccgccgtgcacgacccggagcgtcccctgctgcgctctcccgggctgctgcccgaaatcg
cccccaacgcatccttgggtgtggcacatcgaagaaccggcgggaccgtgaccgacagtccccgtaatcc
ggtaacccgttgagtcccgggtacgaccatcacccgagtctctgggcggagggtggttcccccccgtggctctcgag - atg
US12-486gcagacggcgccggccacgaacgacgggagcggctgcggagcacgcggaccgggagcgggagtcgcagagggcc
gtcggagcggacggcgtcggcatcgcgacgccccggctcgggatcgggatcgcatcggaaagggacacgcggacgc
gggggggaaagacccgcccaccccacccacgaaacacaggggacgcaccccgggggcctccgacgacagaaaccc
accggtccgccttttttgcacgggtaagcaccttgggtgggcggaggagggggggacgcgggggcggaggagggggg
acgcgggggcggaggaggggggacgcgggggcggaggaggggggacgcgggggcggaggaggggggacgcggggg
cggaggagggggctcacccgcgttcgtgccttcccgcaggaggaacgtcctcgtcgaggcgaccggcggcgaccgttgcgtgg
accgcttcctgctcgtcgggggggagc - atg