Method name | Cell type | Sequencing | Code availability | Reference |
TRUST4 | B and T cell | Bulk RNA-seq and scRNA-seq | https://bitbucket.org/liulab/trust | 92 |
MiXCR | B and T cell | Bulk RNA-seq and scRNA-seq | https://mixcr.readthedocs.io | 93 |
ImRep | B and T cell | Bulk RNA-seq | https://github.com/Mangul-Lab-USC/imrep | 94 |
CATT | T cell | Bulk RNA-seq and scRNA-seq | https://github.com/GuoBioinfoLab/CATT | 95 |
V'DJer | B cell | Bulk RNA-seq and scRNA-seq | https://github.com/mozack/vdjer | 96 |
TraCeR | T cell | scRNA-seq | https://github.com/Teichlab/trace | 97 |
TRAPeS | T cell | scRNA-seq | https://github.com/YosefLab/TRAPeS | 98 |
scTCRseq | T cell | scRNA-seq | https://github.com/ElementoLab/scTCRseq | 99 |
BraCeR | B cell | scRNA-seq | https://github.com/teichlab/bracer | 100 |
BALDR | B cell | scRNA-seq | https://github.com/BosingerLab/BALDR | 101 |
BASIC | B and T cell | scRNA-seq | https://github.com/akds/BASIC | 102 |
VDJPuzzle | B and T cell | scRNA-seq | https://github.com/simone-rizzetto/VDJPuzzle | 103 |
RNA-seq, RNA sequencing; scRNA-seq, single-cell RNA sequencing