False-positive plasma genotyping due to clonal hematopoiesis

Y Hu, BC Ulrich, J Supplee, Y Kuang, PH Lizotte… - Clinical Cancer …, 2018 - AACR
Purpose: Plasma cell-free DNA (cfDNA) genotyping is increasingly used in cancer care, but
assay accuracy has been debated. Because most cfDNA is derived from peripheral blood …

[HTML][HTML] Plasma IL-6 changes correlate to PD-1 inhibitor responses in NSCLC

A Keegan, B Ricciuti, P Garden, L Cohen… - … for immunotherapy of …, 2020 - ncbi.nlm.nih.gov
Background Blood-based biomarkers of anti-solid tumor immune checkpoint blockade (ICB)
response are lacking. We hypothesized that changes in systemic cytokine levels with the …

[HTML][HTML] Sensitivity of next-generation sequencing assays detecting oncogenic fusions in plasma cell-free DNA

JG Supplee, MSD Milan, LP Lim, KT Potts, LM Sholl… - Lung Cancer, 2019 - Elsevier
Objectives Plasma genotyping represents an opportunity for convenient detection of
clinically actionable mutations in advanced cancer patients, such has been well …

Salivary HPV DNA informs locoregional disease status in advanced HPV-associated oropharyngeal cancer

GJ Hanna, CJ Lau, U Mahmood, JG Supplee… - Oral oncology, 2019 - Elsevier
Objectives Quantifying tumor DNA in tissue and circulating in blood permits high-quality
molecular monitoring to detect and track cancer progression. Evaluating tumor DNA in both …

Liquid biopsy of fine-needle aspiration supernatant for lung cancer genotyping

N Guibert, H Tsukada, DH Hwang, E Chambers… - Lung Cancer, 2018 - Elsevier
Background Tumor genotyping is transforming lung cancer care but requires adequate
tumor tissue. Advances in minimally invasive biopsy techniques have increased access to …

[HTML][HTML] Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

B Gong, D Li, R Kusko, N Novoradovskaya, Y Zhang… - Genome biology, 2021 - Springer
Background Targeted sequencing using oncopanels requires comprehensive assessments
of accuracy and detection sensitivity to ensure analytical validity. By employing reference …

Plasma ctDNA response is an early marker of treatment effect in advanced NSCLC

ML Cheng, CJ Lau, MSD Milan, JG Supplee… - JCO Precision …, 2021 - ascopubs.org
PURPOSE Plasma circulating tumor DNA (ctDNA) analysis is routine for genotyping of
advanced non–small-cell lung cancer (NSCLC); however, early response assessment using …

Protein biomarkers and alternatively methylated cell-free DNA detect early stage pancreatic cancer

R Ben-Ami, QL Wang, J Zhang, JG Supplee… - Gut, 2024 - gut.bmj.com
Objective Pancreatic ductal adenocarcinoma (PDAC) is commonly diagnosed at an
advanced stage. Liquid biopsy approaches may facilitate detection of early stage PDAC …

Denaturation-enhanced droplet digital PCR for liquid biopsies

M Fitarelli-Kiehl, F Yu, R Ashtaputre… - Clinical …, 2018 - academic.oup.com
BACKGROUND Although interest in droplet-digital PCR technology (ddPCR) for cell-free
circulating DNA (cfDNA) analysis is burgeoning, the technology is compromised by …

[PDF][PDF] Molecular mechanism of N-terminal acetylation by the ternary NatC complex

S Deng, L Gottlieb, B Pan, J Supplee, X Wei… - Structure, 2021 - cell.com
Protein N-terminal acetylation is predominantly a ribosome-associated modification, with
NatA-E serving as the major enzymes. NatC is the most unusual of these enzymes …