False-positive plasma genotyping due to clonal hematopoiesis
Y Hu, BC Ulrich, J Supplee, Y Kuang, PH Lizotte… - Clinical Cancer …, 2018 - AACR
Purpose: Plasma cell-free DNA (cfDNA) genotyping is increasingly used in cancer care, but
assay accuracy has been debated. Because most cfDNA is derived from peripheral blood …
assay accuracy has been debated. Because most cfDNA is derived from peripheral blood …
[HTML][HTML] Plasma IL-6 changes correlate to PD-1 inhibitor responses in NSCLC
A Keegan, B Ricciuti, P Garden, L Cohen… - … for immunotherapy of …, 2020 - ncbi.nlm.nih.gov
Background Blood-based biomarkers of anti-solid tumor immune checkpoint blockade (ICB)
response are lacking. We hypothesized that changes in systemic cytokine levels with the …
response are lacking. We hypothesized that changes in systemic cytokine levels with the …
[HTML][HTML] Sensitivity of next-generation sequencing assays detecting oncogenic fusions in plasma cell-free DNA
JG Supplee, MSD Milan, LP Lim, KT Potts, LM Sholl… - Lung Cancer, 2019 - Elsevier
Objectives Plasma genotyping represents an opportunity for convenient detection of
clinically actionable mutations in advanced cancer patients, such has been well …
clinically actionable mutations in advanced cancer patients, such has been well …
Salivary HPV DNA informs locoregional disease status in advanced HPV-associated oropharyngeal cancer
Objectives Quantifying tumor DNA in tissue and circulating in blood permits high-quality
molecular monitoring to detect and track cancer progression. Evaluating tumor DNA in both …
molecular monitoring to detect and track cancer progression. Evaluating tumor DNA in both …
Liquid biopsy of fine-needle aspiration supernatant for lung cancer genotyping
N Guibert, H Tsukada, DH Hwang, E Chambers… - Lung Cancer, 2018 - Elsevier
Background Tumor genotyping is transforming lung cancer care but requires adequate
tumor tissue. Advances in minimally invasive biopsy techniques have increased access to …
tumor tissue. Advances in minimally invasive biopsy techniques have increased access to …
[HTML][HTML] Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions
Background Targeted sequencing using oncopanels requires comprehensive assessments
of accuracy and detection sensitivity to ensure analytical validity. By employing reference …
of accuracy and detection sensitivity to ensure analytical validity. By employing reference …
Plasma ctDNA response is an early marker of treatment effect in advanced NSCLC
PURPOSE Plasma circulating tumor DNA (ctDNA) analysis is routine for genotyping of
advanced non–small-cell lung cancer (NSCLC); however, early response assessment using …
advanced non–small-cell lung cancer (NSCLC); however, early response assessment using …
Protein biomarkers and alternatively methylated cell-free DNA detect early stage pancreatic cancer
R Ben-Ami, QL Wang, J Zhang, JG Supplee… - Gut, 2024 - gut.bmj.com
Objective Pancreatic ductal adenocarcinoma (PDAC) is commonly diagnosed at an
advanced stage. Liquid biopsy approaches may facilitate detection of early stage PDAC …
advanced stage. Liquid biopsy approaches may facilitate detection of early stage PDAC …
Denaturation-enhanced droplet digital PCR for liquid biopsies
M Fitarelli-Kiehl, F Yu, R Ashtaputre… - Clinical …, 2018 - academic.oup.com
BACKGROUND Although interest in droplet-digital PCR technology (ddPCR) for cell-free
circulating DNA (cfDNA) analysis is burgeoning, the technology is compromised by …
circulating DNA (cfDNA) analysis is burgeoning, the technology is compromised by …
[PDF][PDF] Molecular mechanism of N-terminal acetylation by the ternary NatC complex
S Deng, L Gottlieb, B Pan, J Supplee, X Wei… - Structure, 2021 - cell.com
Protein N-terminal acetylation is predominantly a ribosome-associated modification, with
NatA-E serving as the major enzymes. NatC is the most unusual of these enzymes …
NatA-E serving as the major enzymes. NatC is the most unusual of these enzymes …