Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting

A Dupuy, RM Simon - Journal of the National Cancer Institute, 2007 - academic.oup.com
Background Both the validity and the reproducibility of microarray-based clinical research
have been challenged. There is a need for critical review of the statistical analysis and …

[HTML][HTML] Criteria for the use of omics-based predictors in clinical trials

LM McShane, MM Cavenagh, TG Lively, DA Eberhard… - Nature, 2013 - nature.com
Abstract The US National Cancer Institute (NCI), in collaboration with scientists representing
multiple areas of expertise relevant to 'omics'-based test development, has developed a …

Comparison of MR/ultrasound fusion–guided biopsy with ultrasound-guided biopsy for the diagnosis of prostate cancer

MM Siddiqui, S Rais-Bahrami, B Turkbey, AK George… - Jama, 2015 - jamanetwork.com
Importance Targeted magnetic resonance (MR)/ultrasound fusion prostate biopsy has been
shown to detect prostate cancer. The implications of targeted biopsy alone vs standard …

Use of archived specimens in evaluation of prognostic and predictive biomarkers

RM Simon, S Paik, DF Hayes - Journal of the National Cancer …, 2009 - academic.oup.com
The development of tumor biomarkers ready for clinical use is complex. We propose a
refined system for biomarker study design, conduct, analysis, and evaluation that …

Clustering of non-major histocompatibility complex susceptibility candidate loci in human autoimmune diseases

KG Becker, RM Simon… - Proceedings of the …, 1998 - National Acad Sciences
Human autoimmune diseases are thought to develop through a complex combination of
genetic and environmental factors. Genome-wide linkage searches of autoimmune and …

Randomized clinical trials: perspectives on some recent ideas

DP Byar, RM Simon, WT Friedewald… - … England Journal of …, 1976 - Mass Medical Soc
In spite of the controversy over the role of randomized clinical trials in medical research, the
rationale underlying such trials remains persuasive as compared to recent suggestions for …

A random variance model for detection of differential gene expression in small microarray experiments

GW Wright, RM Simon - Bioinformatics, 2003 - academic.oup.com
Motivation: Microarray techniques provide a valuable way of characterizing the molecular
nature of disease. Unfortunately expense and limited specimen availability often lead to …

[BOOK][B] Design and analysis of DNA microarray investigations

RM Simon, EL Korn, LM McShane, MD Radmacher… - 2003 - Springer
DNA microarrays are an important technology for studying gene expression. With a single
hybridization, the level of expression of thousands of genes, or even an entire genome, can …

Considerations for the successful co-development of targeted cancer therapies and companion diagnostics

J Fridlyand, RM Simon, JC Walrath, N Roach… - Nature Reviews Drug …, 2013 - nature.com
As diagnostic tests become increasingly important for optimizing the use of drugs to treat
cancers, the co-development of a targeted therapy and its companion diagnostic test is …

Curability of advanced Hodgkin's disease with chemotherapy: long-term follow-up of MOPP-treated patients at the National Cancer Institute

VT DeVita Jr, RM SIMON, SM HUBBARD… - Annals of Internal …, 1980 - acpjournals.org
The results of treatment of 198 patients with Hodgkin's disease with MOPP
(mechlorethamine, vincristine, procarbazine, and prednisone) were analyzed. Eighty …